We examine the impact of helium reionization on the structure of the intergalactic medium (IGM). We model the reionization using a radiative transfer (RT) code coupled to the combined gravity hydrodynamics code Enzo. Neutral hydrogen and helium are initially ionized by a starburst spectrum, which is allowed to gradually evolve into a power law spectrum over the redshift interval 3 < z 0.5 h/Mpc by a few percent by z = 2. Absorption spectra for HI and HeII are drawn from the simulations, and absorption lines are fit to the spectra. A median Doppler parameter of 35 km/s is obtained for the HI absorption systems at z = 3. Dividing into subsamples optically thick and optically thin at line centre reveals that the optically thick systems undergo only mild evolution while the optically thin systems evolve rapidly following HeII reionization. A comparison between HeII and HI absorption features shows a broad distribution in the HeII and HI column density ratio, peaking near the measured value and only slightly narrower than measured. A comparison with approximate simulation methods shows moderately good agreement in the absorption line properties, but not to the precision to which they may be measured.

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